1 Videos, slides, & files

1.1 Day 1 introductory presentations

1.1.1 Workshop introduction

Slides

1.1.2 eDNA & metabarcoding

Slides

1.1.3 Data management

Slides

1.2 Dada2 practical

1.2.1 Example data & primer removal

Slides

1.2.2 The metabarcoding analysis pipeline

Slides

1.2.3 Taxonomic classification, reference databases, diversity analyses

Slides

1.2.4 Dada2 pipeline wrap-up

Slides

1.2.5 Dada2 practical files

The below compressed directory is provided so you may attempt the workshop materials on a computer/cluster available to you.

Note:

  • The file locations will not match
  • Copy the link and paste it to your browser’s address bar.

Download files

Download an example Jupyter notebook file

1.2.6 Dada2 Bookdown

Links to the online version of the Bookdowns.

You can download the html files of the bookdown below. Ensure you unzip the directory before use.

You can also download a pdf file of the bookdown using the link below.

1.3 The ENA (European Nucleotide Archive)

Slides

1.3.1 ENA practical

Download the ENA practical documents: ENA practical docs

1.4 MGnify: Metagenomics data analysis and retrieval

Slides

1.4.1 MGnify practical

MGnify tutorial

1.5 Day 3 concluding presentations

1.5.1 Looking forward: new developments and applications

Slides

1.5.2 Workshop wrap-up presentation

Slides


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